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BIOS² Education resources

Biodiversity Modelling 2019

The 2019 edition of the Summer School was on the theme: Biodiversity Modelling. The course took the form of lectures and practical exercises that covered a variety of methods used to model biodiversity, complemented by guest speakers.

Dominique Gravel, Guillaume Blanchet

Biodiversity Modelling 2022

The 2022 edition of the Biodiversity Modelling Summer School was on the theme: Biodiversity changes and data visualization. The course took the form of a workshop during which the students, in collaboration with local organizations involved in biodiversity monitoring, developed a web platform for visualizing biodiversity changes.

Dominique Gravel, Vincent Beauregard

Biodiversity Modelling 2024

The 2024 edition of the Biodiversity Modelling Summer School has as the theme “Indicators to monitor biodiversity changes”, and we’ll discuss metrics to assess the health, diversity, and distribution of species, ecosystems, and genetic variability within an environment.

Dominique Gravel, Vincent Beauregard, Gracielle Higino

Building R packages

This practical training will cover the basics of modern package development in R with a focus on the following three aspects: (1) how to turn your code into functions, (2) how to write tests and documentation, and (3) how to share your R package on GitHub..

Andrew MacDonald

Data Visualization

General principles of visualization and graphic design, and techniques of tailored visualization. This training was developed and delivered by Alex Arkilanian and Katherine Hébert on September 21st and 22nd, 2020.

Alex Arkilanian, Katherine Hébert

Generalized Linear Models for Community Ecology

In this workshop we will explore, discuss, and apply generalized linear models to combine information on species distributions, traits, phylogenies, environmental and landscape variation. We will also discuss inference under spatial and phylogenetic autocorrelation under fixed and random effects implementations. We will discuss technical elements and cover implementations using R.

Pedro Peres-Neto

Introduction to EDI Concepts in a Scientific Context

A short introduction to EDI concepts in a scientific context.

Agathe Riallan, Marie-José Naud

Introduction to Generalized Additive Models (GAMs)

To address the increase in both quantity and complexity of available data, ecologists require flexible, robust statistical models, as well as software to perform such analyses. This workshop will focus on how a single tool, the R mgcv package, can be used to fit Generalized Additive Models (GAMs) to data from a wide range of sources.

Introduction to Microbiome Analysis

This workshop will give an overview of the theory and practice of using metabarcoding approaches to study the diversity of microbial communities. The workshop will give participants an understanding of 1) the current methods for microbiome diversity quantification using metabarcoding/amplicon sequencing approaches and 2) the normalization and diversity analysis approaches that can be used to quantify the diversity of microbial communities.

Steven Kembel, Zihui Wang, Salix Dubois

Introduction to Shiny Apps

Introduction to interactive app development with R Shiny.

Katherine Hébert, Andrew MacDonald, Jake Lawlor, Vincent Bellavance

Making Websites with HUGO

This workshop provides a general introduction to HUGO, a popular open source framework for building websites without requiring a knowledge of HTML/CSS or web programming.

Dominique Gravel, Guillaume Larocque

Mathematical Modeling in Ecology and Evolution

This workshop will introduce participants to the logic behind modeling in biology, focusing on developing equations, finding equilibria, analyzing stability, and running simulations.Techniques will be illustrated with the software tools, Mathematica and Maxima. This workshop was held in two parts: January 14 and January 16, 2020.

Point-count Data Analysis

Analysis of point-count data in the presence of variable survey methodologies and detection error offered by Péter Sólymos to BIOS2 Fellows in March 2021.

Péter Sólymos

Science Communication

Recordings, content and handouts from a 6-hour Science Communication workshop held over two days on 15 and 16 June 2020.

Gracielle Higino, Katherine Hébert

Sensibilisation aux réalités autochtones et recherche collaborative

Série de deux webinaires sur la sensibilisation aux réalités autochtones et la recherche en collaboration avec les Autochtones, offert du 28 au 30 avril 2020 par Catherine-Alexandra Gagnon, PhD.

Catherine-Alexandra Gagnon

Spatial Statistics in Ecology

Training session about statistical analysis of spatial data in ecology, hosted by Philippe Marchand (UQAT). | Session de formation sur l’analyse statistique des données spatiales en écologie, animée par Pr. Philippe Marchand (UQAT).

Philippe Marchand

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